Publications

2024

1.  Daniel Steiert,  Correy Wittig,  Priyanka Banerjee, Robert Preissner and Robert Szulcek, An Exploration into CTEPH Medications: Combining Natural Language Processing, Embedding Learning, In Vitro Models, and Real-World Evidence for Drug Repurposing, in PLOS Computational Biology, Sept 2024 (accepted). 

2.  Priyanka Banerjee, Onur Ulker, Irem Ozkan, Ozge Cemiloglu Ulker, The investigation of the toxicity of organophosphorus flame retardants (OPFRs) by using in silico toxicity prediction platform ProTox- 3.0, in Toxicology Mechanisms and Methods,  July 2024 

3. Paraskevi Bessa, Andrew G. Newman, Kuo Yan, Theres Schaub, Rike Dannenberg, Denis Lajkó, Julia Eilenberger, Theresa Brunet, Kathrin Textoris-Taube, Emanuel Kemmler, Priyanka Banerjee, Ethiraj Ravindran, Robert Preissner, Marta Rosário, and Victor Tarabykin: Semaphorin Heterodimerization in cis Regulates Membrane Targeting and Neocortical Wiring, in Nature Communications, August 2024

4. Frederic O. Dehnbostel, Vaibhav A. Dixit, Robert Preissner and Priyanka Banerjee, Non-animal models for blood-brain barrier permeability evaluation of drug-like compounds, in Scientific Reports,  April 2024

5. Priyanka Banerjee, Emanuel Kemmler, Mathias Dunkel, Robert Preissner: ProTox 3.0: a web server for the prediction of toxicity of chemicals,  in Nucleic Acids Research,  April 2024

6. Olubunmi Atolani, Priyanka Banerjee, Adedamola Elizabeth Ayenı, Muhammed Abubakar Usman, Opeyemi Jamiu, Adejumo Ochuko L. Erukaınure, Robert Preıssner, Jean Baptiste Sokoudjou, Mary Olufunmilayo Ologe, Oluyomi Stephen Adeyemı, Ifeoluwa Adedotun: Phytochemical, Pharmacological, Phyto-cosmeceutical, Toxicity, and In silico Toxicological Evaluations of Vernonia amygdalina Delile – A Review, in JOTCS,  May 2024

2023

7. Priyanka Banerjee, Saskia Preissner and Robert Preissner: Using Real-World Evidence Data and Digital Monitoring to Analyze the Hepatotoxic Profiles of Biologics across more than two Million Patients, in Scientific Reports, July 2023

8. Emmanuel Kemmler, Julian Braun, Fauchere Florent, Sabine Dölle-Bierke, Kirsten Beyer, Robert Preissner, Margitta Worm and Priyanka Banerjee: Data-driven analysis of chemicals, proteins and pathways associated with peanut allergy: from molecular networking to biological interpretation, in Food Science and Human Wellness,  June 2023

9.  Ozge Cemiloglu Ulker and Priyanka Banerjee : Editorial: [Is it time to stick it to PFAS], in Front. Toxicol.Sec. Immunotoxicology,  June 2023

10. Paraskevi Bessa, Andrew G. Newman, Kuo Yan, Theres Schaub, Rike Dannenberg, Denis Lajkó, Julia Eilenberger, Theresa Brunet, Kathrin Textoris-Taube, Emanuel Kemmler, Priyanka Banerjee, Ethiraj Ravindran, Michael Mülleder, Robert Preissner, Rudolf Grosschedl, Marta Rosário, Victor Tarabykin : Sema7A and Sema4D Heterodimerization is Essential for Membrane Targeting and Neocortical Wiring, bioRxiv 2023.02.10.527998; Feb 2023.

2022

11. Kathleen Gallo, Emmanuel Kemmler, Andrean Goede, Finnja Becker, Mathias Dunkel, Robert Preissner and Priyanka Banerjee: SuperNatural 3.0 - a database of natural products and natural product-based derivatives, In Nucleic Acids Research, Nov 2022

12. Margitta Worm, Aikaterina Alexiou, Veronika Höfer, Till Birkner, Alexander C. S. N. Jeanrenaud, Florent Fauchère, Kristijan Pazur, Carolin Steinert, Aleix Arnau-Soler, Priyanka Banerjee, Andreas Diefenbach, Josefine Dobbertin-Welsch, Sabine Dölle-Bierke, Wojciech Francuzik, Ahla Ghauri, Stephanie Heller, Birgit Kalb, Ulrike Löber, Ingo Marenholz, Lajos Markó, Jörg Scheffel, Olena Potapenko, Stephanie Roll, Susanne Lau, Young-Ae Lee, Julian Braun, Andreas Thiel, Magda Babina, Sabine Altrichter, Sofia Kirke Forslund, Kirsten Beyer: An interdisciplinary approach to characterize peanut-allergic patients—First data from the FOOD@ consortium,  in Clinical and Translational Allergy, Oct 2022

13. Gloria Elemo, Ochuko Erukainure, Jane Okafor, Priyanka Banerjee, Robert Preissner, Viola Nicholas-Okpara, O. Atolani, Olusola Omowunmi, Chika Ezeanyanaso, Ajoritsedere  Awosika, Francis Shode: Underutilized Legumes, Cajanus cajan and Glycine max may bring about Anti-Sickling Effect in Sickle Cell Disease by Modulation of Redox Homeostasis in Sickled Erythrocytes and Alteration of its Functional Chemistry in Journal of Food Biochemistry, Jun 2022

14. Gayatri Panda, Neha Mishra, Disha Sharma, Rahul C. Bhoyar, Abhinav Jain, Mohamed Imran, Vigneshwar Senthilvel, Mohit Kumar Divakar, Anushree Mishra, Parth Garg, Priyanka Banerjee, Sridhar Sivasubbu, Vinod Scaria, Arjun Ray; Comprehensive assessment of Indian variations in the druggable kinome landscape highlights distinct insights at the sequence, structure and pharmacogenomic stratum in Frontiers in Pharmacology, Jul 2022

15. Priyanka Banerjee and Robert Preissner: SuperCYPsPred: New Tool for Computational Prediction of CYPs Drug-Drug Interactions in  Pharmaceutical Medicine, Mar 2022

16. Priyanka Banerjee and Ozge Cemiloglu Ulker: Combinative ex vivo studies and in silico models ProTox-II for investigating the toxicity of chemicals used mainly in cosmetic products in Toxicology Mechanisms and Methods,  Mar 2022

2021

17. Ochuko L. Erukainure, Olubunmi Atolani, Aliyu Muhammad, Rahul Ravichandran, Musa M. Abarshi, Sanusi B. Katsayal, Chika I. Chukwuma, Robert Preissner, Priyanka Banerjee and M. Ahmed Mesai, Translational suppression of SARS-COV-2 ORF8 protein mRNA as a Viabletherapeutic target against COVID-19: Computational studies on potential roles of isolated compounds from Clerodendrum volubile leaves in  Computers in Biology and Medicine, October 2021

18. Atolani, Olubunmi., Olorunde, Olufunke Esan., Banerjee, Priyanka., Adeyemi, Oluyomi Stephen., Preissner, Robert. ISOLATION, CHARACTERIZATIONS, ANTI-CANCER, CYTOTOXICITY, IN SILICO TOXICITY, AND ANTIMICROBIAL EVALUATIONS OF MORINGA OLEIFERA SEED PROTEIN In Periodico Tche Quimica 18 Volume 18, Aug 2021

19. Ochuko L. Erukainure, Veronica F. Salau, Olubunmi Atolani, Rahul Ravichandran, Priyanka Banerjee, Robert Preissner, Neil A. Koorbanally & Md. Shahidul Islam, L-leucine stimulation of glucose uptake and utilization involves modulation of glucose – lipid metabolic switch and improved bioenergetic homeostasis in isolated rat psoas muscle ex vivo,  In Amino Acids, Springer Nature, June 2021

20.  Gayatri Panda, Neha Mishra, Disha Sharma, Rahul C. Bhoyar, Abhinav Jain, Mohamed Imran, Vigneshwar Senthilvel, Mohit Kumar Divakar, Anushree Mishra, Parth Garg, Priyanka Banerjee, Sridhar Sivasubbu, Vinod Scaria, Arjun Ray; Comprehensive assessment of Indian variations in the druggable kinome landscape highlights distinct insights at the sequence, structure and pharmacogenomic stratum, (preprint)

21. Fritz, Franziska, Preissner, Robert and Banerjee, Priyanka, VirtualTaste: a web server for the prediction of organoleptic properties of chemical compounds, In Nucleic Acids Research, April 2021

22.  Erukainure O.L, Atolani.O, Banerjee.P, Abel.R, Pooe O.J, Adeyemi .O.S, Preissner. P, Chukwuma C.I, Koorbanally N.A, Islam MD.S. Oxidative testicular injury: effect of l-leucine on redox, cholinergic and purinergic dysfunctions, and dysregulated metabolic pathways.  Amino Acids-Springer Nature, Feb 2021

2022

23.  Abel.R, Paredes Ramos. M, Chen.Q, Pérez Sánchez. H, Coluzzi. F, Rocco. M, Mura. C, Simmaco. M, Bourne .P, Preissner. R and Banerjee. P. Computational prediction of potential inhibitors of the main protease of SARS-CoV-2, Frontiers In Chemistry,  Molecular Studies of COVID-19 studies, Dec 2020

24. Slusarczyk,S.,Sezer Senol Deniz,F.,Abel,R.,Pecio,L.,Perez-Sanchez,H.,Ceron-Carrasco,J.,den-Haan,H., Banerjee,P., Preissner,R., Krzyzak,E.,Oleszek,W.,Orhan,IE.,Matkowski,A. Norditerpenoids with Selective Anti-Cholinesterase Activity from the Roots of Perovskia atriplicifolia Benth , In International Journal of Molecular Sciences Volume 21, 4475, Jun 2020

25. Banerjee P, Dunkel M, Kemmler E and Preissner R
    SuperCYPsPred- A Web Server for the Prediction of Cytochrome Activity
    In Nucleic Acids Research, Mar 2020 (NAR-web-server issue 2020)

26. Atolani O, Olorundare OE, Banerjee P, Osin OA, Preissner R, Njan AA
    Isolation, Characterisation and In Silico Toxicity Evaluations of Thiocarbamates, Isothiocyanates, Nitrile, Glucosinolate and Lipids from Moringa oleifera Lam. Seed
    In Journal of the Turkish Chemical Society Section A: Chemistry Volume 7, 235-244, Jan 2020

2019

27. Banerjee P,  Preissner R
    ProTox-II: Non-Animal Models for Prediction of Chemical Toxicity, In Pharmazeutische Medizin Volume 21, 02-06, Nov 2019

2018

28. Banerjee P , Dehnbostel F.O and Preissner R
    Prediction is a Balancing Act: Importance of Sampling Methods to Balance Sensitivity and Specificity of Predictive Models based on Imbalanced Chemical Data Sets
    In Frontiers in Chemistry Volume 6, 362, 2018, August 28,

29. Banerjee P , Eckert O.A, Schrey A and Preissner R
    ProTox-II - a webserver for the prediction of toxicity of chemicals
    In Nucleic Acids Research, Apr 2018,

30. Banerjee P and Preissner R
    BitterSweetForest: Forest Based Binary Classifier to Predict Bitterness and Sweetness of Chemical Compounds.
    In Frontiers in Chemistry Volume 6, 393, 2018, April 11

31. Oluyomi S.A, Olubunmi A, Banerjee P , Arolasafe G, Preissner R, Etukudoh P and Ibraheem O .
    Computational and experimental validation of antioxidant properties of synthesized bioactive ferulic acid derivatives.
    In International Journal of Food Properties, 2018 Feb 09.

32. Erukainure OL, Hafizur RM, Kabir N, Choudhary MI, Atolani O, Banerjee P , Preissner R, Chukwuma CI, Muhammad A, Amonsou EO and Islam MS.Suppressive Effects of Clerodendrum volubile P Beauv. [Labiatae] Methanolic Extract and Its Fractions on Type 2 Diabetes and Its Complications. In Front. Pharmacol. 9:8. 2018 Feb 01.

33. Banerjee P , Schrey A. K. and Preissner R. Computational Methods for the Prediction of Chemical Toxicity, In pharmazeutische medizin, 2017 Mar 21, ISSN 2191-6039

2016

34. Erukainure O.L, Hafizur R.M, Choudhary M.I, Adhikari A, Mesaik A.M, Atolani O, Banerjee P,  Preissner R, Muhammad A and Islam MS
    Anti-diabetic effect of the ethyl acetate fraction of Clerodendrum volubile: protocatechuic acid suppresses phagocytic oxidative burst and modulates inflammatory cytokines. J Biomed Pharmacother.2016 Dec 21;86:307-315.

35. Banerjee P,  Siramshetty V.B, Drwal M.N. and Preissner R: Computational methods for prediction of in vitro effects of new chemical structures, In J Cheminform (2016) 8:51.

2015

36. Drwal M.N, Siramshetty V.B, Banerjee P , Goede A, Preissner R and Dunkel M (2015)
    Molecular similarity-based predictions of the Tox21 screening outcome, In Front. Environ. Sci. 3:54. doi: 10.3389/fenvs.2015.00054 [PDF]

37. I.G. Metushi, A. Wriston, P. Banerjee , B.O. Gohlke, A.M. English, A. Lucas, C. Moore, J. Sidney, S. Buus, D.A. Ostrov, S. Mallal, E. Phillips, J. Shabanowitz, D.F. Hunt, R. Preissner and B. Peters, Acyclovir Has Low but Detectable Influence on HLA-B*57:01 Specificity without Inducing Hypersensitivity. In PLoS ONE 10(5): e0124878 (2015).

2014

38. P.Banerjee,  J.Erehman,  B.O Gohlke, T.Wilhelm,  R.Preissner and M.Dunkel
    Super Natural II: A database of natural products, In Nucleic Acids Res.(Database issue) (2014)

39. J.Nickel, B.O Gohlke, J.Erehman,P. Banerjee , W. W. Rong,A.Goede, M.Dunkel and R.Preissner
    SuperPred: Update on drug classification and target prediction, In Nucleic Acids Res.(Webserver issue) (2014)

40. M. Drwal, P. Banerjee,  M. Dunkel, M. Wettig and R. Preissner
    ProTox: A web server for the in silico prediction of rodent oral toxicity, In Nucleic Acids Res. 42(Webserver issue 2014) : W53-58.